Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: septin9a ENSDARG00000020235

.

Description

septin 9a [Source:NCBI gene (formerly Entrezgene);Acc:337243]

Location

Chromosome 3: 34,452,336-34,586,403 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 7 transcripts (splice variants), 209 orthologues, 36 paralogues and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023039.11	septin9a-201	2992	587aa	ENSDARP00000016316.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TAV1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000166623.2	septin9a-207	6547	595aa	ENSDARP00000139482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TB56	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000129313.4	septin9a-202	3228	663aa	ENSDARP00000112030.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000151515.2	septin9a-206	970	246aa	ENSDARP00000125922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136221.3	septin9a-203	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000150945.2	septin9a-204	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000151122.2	septin9a-205	638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

.

Summary

.

.