Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: raph1a ENSDARG00000006301

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Description

Ras association (RalGDS/AF-6) and pleckstrin homology domains 1a [Source:NCBI gene (formerly Entrezgene);Acc:557435]

Location

Chromosome 9: 13,814,963-13,963,078 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061156.7	raph1a-201	4399	1346aa	ENSDARP00000061155.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8N7UQQ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000193398.1	raph1a-204	4324	1321aa	ENSDARP00000150305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QAD9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000146597.2	raph1a-203	2010	670aa	ENSDARP00000118640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132960.2	raph1a-202	774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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