Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: tpm3 ENSDARG00000005162

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Description

tropomyosin 3 [Source:NCBI gene (formerly Entrezgene);Acc:373076]

Location

Chromosome 19: 10,985,369-11,031,394 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 6 transcripts (splice variants), 386 orthologues, 5 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000151375.3	tpm3-204	3093	284aa	ENSDARP00000125941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ISQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000188025.1	tpm3-206	5591	284aa	ENSDARP00000149575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q650	-
ENSDART00000183745.1	tpm3-205	5073	248aa	ENSDARP00000151109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000010997.8	tpm3-201	2501	248aa	ENSDARP00000012717.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803M1	-
ENSDART00000027598.9	tpm3-202	1496	284aa	ENSDARP00000004352.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P0W3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000137865.2	tpm3-203	386	81aa	ENSDARP00000113122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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