Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: tshz1 ENSDARG00000005026

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Description

teashirt zinc finger homeobox 1 [Source:NCBI gene (formerly Entrezgene);Acc:369196]

Location

Chromosome 19: 21,266,008-21,416,407 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 3 transcripts (splice variants), 199 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186194.1	tshz1-203	4852	1158aa	ENSDARP00000148441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJM5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000122002.4	tshz1-202	8757	1139aa	ENSDARP00000105499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NU84	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000024639.7	tshz1-201	8205	1139aa	ENSDARP00000023365.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NU84	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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