Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: stx3b ENSDARG00000001880

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Description

syntaxin 3b [Source:NCBI gene (formerly Entrezgene);Acc:393515]

Location

Chromosome 14: 21,699,129-21,751,346 forward strand.

GRCz11:CM002898.2

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000073707.6	stx3b-201	2051	288aa	ENSDARP00000068197.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000169942.2	stx3b-203	1275	285aa	ENSDARP00000140602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QP33	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000183667.1	stx3b-204	864	287aa	ENSDARP00000153907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000161435.2	stx3b-202	227	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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