Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ptpn4a ENSDARG00000000631

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Description

protein tyrosine phosphatase non-receptor type 4a [Source:NCBI gene (formerly Entrezgene);Acc:368448]

Location

Chromosome 9: 28,939,912-29,029,980 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 5 transcripts (splice variants), 202 orthologues and 55 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000000670.9	ptpn4a-201	6112	929aa	ENSDARP00000000854.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32U039	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000078823.9	ptpn4a-202	4606	882aa	ENSDARP00000073283.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000188836.1	ptpn4a-205	2842	928aa	ENSDARP00000152667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000183391.1	ptpn4a-204	2779	921aa	ENSDARP00000152804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JFS7	-
ENSDART00000151941.2	ptpn4a-203	393	46aa	ENSDARP00000126342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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