Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: pcdh10a ENSDARG00000099729

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Description

protocadherin 10a [Source:NCBI gene (formerly Entrezgene);Acc:259186]

Location

Chromosome 1: 12,763,461-12,797,410 forward strand.

GRCz11:CM002885.2

About this gene

This gene has 5 transcripts (splice variants), 192 orthologues, 64 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180121.1	pcdh10a-204	3566	1001aa	ENSDARP00000144991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYV7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000189465.1	pcdh10a-205	2994	997aa	ENSDARP00000152743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QI99	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000165785.2	pcdh10a-203	1235	145aa	ENSDARP00000139555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000162652.2	pcdh10a-202	752	171aa	ENSDARP00000137393.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000159226.2	pcdh10a-201	510	17aa	ENSDARP00000132257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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