Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: nlgn1 ENSDARG00000077710

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Description

neuroligin 1 [Source:ZFIN;Acc:ZDB-GENE-090918-1]

Location

Chromosome 11: 9,564,154-9,985,415 reverse strand.

GRCz11:CM002895.2

About this gene

This gene has 4 transcripts (splice variants), 252 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189677.1	nlgn1-204	2604	867aa	ENSDARP00000155186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D2X2F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000113171.3	nlgn1-201	2544	847aa	ENSDARP00000098640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6EUL6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000123359.3	nlgn1-202	2203	304aa	ENSDARP00000105451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000167465.2	nlgn1-203	153	51aa	ENSDARP00000139283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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