Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SHOX2 ENSDARG00000075713

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Description

shox homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]

Location

Chromosome 15: 2,182,103-2,188,422 reverse strand.

GRCz11:CM002899.2

About this gene

This gene has 3 transcripts (splice variants), 195 orthologues, 56 paralogues and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000009564.9	SHOX2-201	1684	299aa	ENSDARP00000018280.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZN8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138941.2	SHOX2-203	884	200aa	ENSDARP00000121424.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135460.2	SHOX2-202	854	191aa	ENSDARP00000119167.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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