Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: hspa12a ENSDARG00000070603

.

Description

heat shock protein 12A [Source:ZFIN;Acc:ZDB-GENE-031001-1]

Location

Chromosome 17: 21,220,934-21,280,185 reverse strand.

GRCz11:CM002901.2

About this gene

This gene has 6 transcripts (splice variants), 206 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123198.4	hspa12a-201	2614	671aa	ENSDARP00000106960.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8K1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000181356.1	hspa12a-206	2294	655aa	ENSDARP00000149134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RN86	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000156580.3	hspa12a-203	1826	493aa	ENSDARP00000129021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000157518.2	hspa12a-204	1569	411aa	ENSDARP00000137065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000155221.3	hspa12a-202	1024	249aa	ENSDARP00000127681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000166524.2	hspa12a-205	313	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

.

Summary

.

.