Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: psmd11a ENSDARG00000060150

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Description

proteasome 26S subunit, non-ATPase 11a [Source:NCBI gene (formerly Entrezgene);Acc:503934]

Location

Chromosome 3: 34,801,146-34,816,979 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 4 transcripts (splice variants), 159 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154696.3	psmd11a-204	4900	421aa	ENSDARP00000129353.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P3G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000084448.5	psmd11a-201	2015	421aa	ENSDARP00000078883.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P3G4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151537.2	psmd11a-203	734	34aa	ENSDARP00000125950.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151449.2	psmd11a-202	832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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