Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:rp71-45g20.10 ENSDARG00000056907

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Description

si:rp71-45g20.10 [Source:ZFIN;Acc:ZDB-GENE-070912-707]

Location

Chromosome 9: 27,804,027-27,805,832 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 10 transcripts (splice variants), 123 orthologues and 65 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140608.3	si:rp71-45g20.10-206	1040	265aa	ENSDARP00000113241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000114542.4	si:rp71-45g20.10-201	1010	173aa	ENSDARP00000098427.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHX5	-
ENSDART00000192431.1	si:rp71-45g20.10-210	522	173aa	ENSDARP00000148620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHX5	-
ENSDART00000141022.3	si:rp71-45g20.10-207	865	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000132510.3	si:rp71-45g20.10-203	1209	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000144604.2	si:rp71-45g20.10-209	806	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000142630.2	si:rp71-45g20.10-208	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000131803.3	si:rp71-45g20.10-202	671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000138476.2	si:rp71-45g20.10-204	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139640.3	si:rp71-45g20.10-205	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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