Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: gria3b ENSDARG00000037498

.

Description

glutamate receptor, ionotropic, AMPA 3b [Source:NCBI gene (formerly Entrezgene);Acc:368416]

Location

Chromosome 14: 12,533,560-12,837,432 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 3 transcripts (splice variants), 187 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000165004.2	gria3b-202	4681	883aa	ENSDARP00000133635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q71E60	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000178444.2	gria3b-203	5968	883aa	ENSDARP00000143892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y9Q6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000043180.3	gria3b-201	2708	883aa	ENSDARP00000043179.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q71E60	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

.

Summary

.

.