Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SMAD5 ENSDARG00000037238

.

Description

SMAD family member 5 [Source:ZFIN;Acc:ZDB-GENE-990603-9]

Location

Chromosome 14: 26,467,120-26,498,325 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 6 transcripts (splice variants), 202 orthologues, 12 paralogues and is associated with 98 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000054175.6	SMAD5-201	2551	464aa	ENSDARP00000054174.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMC0 Q9W7E7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191084.1	SMAD5-204	2834	464aa	ENSDARP00000149901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMC0 Q9W7E7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191143.1	SMAD5-206	2763	464aa	ENSDARP00000154529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMC0 Q9W7E7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183347.1	SMAD5-205	2477	464aa	ENSDARP00000155132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMC0 Q9W7E7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187280.1	SMAD5-203	2059	464aa	ENSDARP00000153815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMC0 Q9W7E7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145625.2	SMAD5-202	894	131aa	ENSDARP00000121034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

.

Summary

.

.