Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: capns1a ENSDARG00000035329

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Description

calpain, small subunit 1 a [Source:NCBI gene (formerly Entrezgene);Acc:550598]

Location

Chromosome 5: 36,654,817-36,665,694 forward strand.

GRCz11:CM002889.2

About this gene

This gene has 6 transcripts (splice variants), 232 orthologues and 29 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131339.3	capns1a-203	1287	216aa	ENSDARP00000119693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LYC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000015240.9	capns1a-201	1259	216aa	ENSDARP00000020352.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LYC9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000125653.3	capns1a-202	1029	156aa	ENSDARP00000107632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q568A3	-
ENSDART00000141440.2	capns1a-205	739	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000144932.3	capns1a-206	671	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140676.2	capns1a-204	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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