Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: capns1b ENSDARG00000013804

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Description

calpain, small subunit 1 b [Source:NCBI gene (formerly Entrezgene);Acc:560033]

Location

Chromosome 15: 29,113,616-29,122,830 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 6 transcripts (splice variants), 235 orthologues and 29 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016112.11	capns1b-201	1345	213aa	ENSDARP00000021850.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DFQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191099.1	capns1b-206	1344	242aa	ENSDARP00000144680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000190015.1	capns1b-205	1257	213aa	ENSDARP00000155958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DFQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153609.3	capns1b-202	971	213aa	ENSDARP00000127492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DFQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000155630.2	capns1b-204	692	188aa	ENSDARP00000129147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000155057.2	capns1b-203	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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