Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ctsl.1 ENSDARG00000003902

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Description

cathepsin L.1 [Source:ZFIN;Acc:ZDB-GENE-040718-61]

Location

Chromosome 17: 27,456,804-27,461,321 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 5 transcripts (splice variants), 601 orthologues, 35 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017756.9	ctsl.1-201	1434	334aa	ENSDARP00000021632.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHT0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181461.1	ctsl.1-205	1817	334aa	ENSDARP00000151690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHT0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180178.1	ctsl.1-204	1655	334aa	ENSDARP00000146326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHT0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000155591.2	ctsl.1-202	543	127aa	ENSDARP00000129742.1	Nonsense mediated decay	-	-
ENSDART00000156158.2	ctsl.1-203	642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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