Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: nalcn ENSDARG00000001835

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Description

sodium leak channel, non-selective [Source:ZFIN;Acc:ZDB-GENE-050410-12]

Location

Chromosome 9: 31,589,425-31,747,106 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 5 transcripts (splice variants), 213 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000048469.9	nalcn-201	5548	1742aa	ENSDARP00000048468.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000135022.3	nalcn-202	5268	1717aa	ENSDARP00000117434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000145204.2	nalcn-204	3195	409aa	ENSDARP00000117199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000186889.1	nalcn-205	2879	384aa	ENSDARP00000151440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000142289.2	nalcn-203	506	168aa	ENSDARP00000114064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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