Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CIITA ENSPTRG00000007761

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Description

class II major histocompatibility complex transactivator [Source:VGNC Symbol;Acc:VGNC:13687]

Location

Chromosome 16: 11,282,235-11,330,918 forward strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 4 transcripts (splice variants), 140 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000014299.5	CIITA-201	4536	1131aa	ENSPTRP00000013252.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A663DEB9 H2QAK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000092062.1	CIITA-204	3342	1113aa	ENSPTRP00000076886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SIK6	-
ENSPTRT00000103683.1	CIITA-203	1641	546aa	ENSPTRP00000061498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RA47 A0A6D2VS79	-
ENSPTRT00000085922.1	CIITA-202	1062	353aa	ENSPTRP00000084333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T650 A0A6D2VZF3	-

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Summary

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