Transcript: ZK328.1b.1 cyk-3-201

Description

Ubiquitin carboxyl-terminal hydrolase cyk-3 [Source:NCBI gene (formerly Entrezgene);Acc:175853]

Location

About this transcript

This transcript has 14 exons, is annotated with 23 domains and features and maps to 54 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ZK328.1b.1	cyk-3-201	3830	1178aa	ZK328.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8WT44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ZK328.1a.1	cyk-3-202	4141	1175aa	ZK328.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,830 bps, Translation length: 1,178 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WT44

Version

ZK328.1b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase