Transcript: Y55F3AM.6b.1 lep-2-201

Description

E3 ubiquitin-protein ligase makorin [Source:NCBI gene (formerly Entrezgene);Acc:176918]

Location

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features and maps to 48 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y55F3AM.6a.1	lep-2-202	1258	413aa	Y55F3AM.6a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N373	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y55F3AM.6b.1	lep-2-201	1112	343aa	Y55F3AM.6b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,112 bps, Translation length: 343 residues

Version

Y55F3AM.6b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase