Transcript: T16H12.5a.1 spop-1-201

Description

Speckle-type POZ protein homolog [Source:NCBI gene (formerly Entrezgene);Acc:176422]

Location

About this transcript

This transcript has 7 exons, is annotated with 19 domains and features and maps to 76 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
T16H12.5a.1	spop-1-201	1728	451aa	T16H12.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34568	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
T16H12.5b.1	spop-1-202	1587	409aa	T16H12.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,728 bps, Translation length: 451 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P34568

Version

T16H12.5a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase