Transcript: F59E12.4b.1 npl-4.1-201

Description

Nuclear protein localization 1 [Source:NCBI gene (formerly Entrezgene);Acc:173952]

Location

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features and maps to 46 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F59E12.4b.1	npl-4.1-201	1684	529aa	F59E12.4b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYU6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
F59E12.4a.1	npl-4.1-202	1658	527aa	F59E12.4a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,684 bps, Translation length: 529 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: H2KYU6

Version

F59E12.4b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase