Transcript: C34G6.7b.1 stam-1-203

Description

Signal transducing adapter molecule 1 [Source:NCBI gene (formerly Entrezgene);Acc:172264]

Location

Chromosome I: 5,902,515-5,904,327 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene WBGene00004109 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
C34G6.7a.2	stam-1-201	1601	457aa	C34G6.7a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O01498	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C34G6.7a.1	stam-1-202	1587	457aa	C34G6.7a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O01498	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C34G6.7b.1	stam-1-203	1212	397aa	C34G6.7b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,212 bps, Translation length: 397 residues

Version

C34G6.7b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

Transcript: C34G6.7b.1 stam-1-203

Summary

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Transcript: C34G6.7b.1 stam-1-203

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