Transcript: C11G6.1a.1 taf-3-202

Description

PHD-type domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:181704]

Location

Chromosome X: 16,332,440-16,346,027 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 31 domains and features and maps to 103 oligo probes.

Gene

This transcript is a product of gene WBGene00006384 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
C11G6.1a.1	taf-3-202	3474	1007aa	C11G6.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9P861	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C11G6.1d.1	taf-3-201	3285	942aa	C11G6.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I6CMF0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
C11G6.1b.1	taf-3-203	1047	348aa	C11G6.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9P862	-
C11G6.1c.1	taf-3-204	630	209aa	C11G6.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9P863	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,474 bps, Translation length: 1,007 residues

Version

C11G6.1a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

Transcript: C11G6.1a.1 taf-3-202

Summary

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Transcript: C11G6.1a.1 taf-3-202

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