Transcript: C10E2.3a.1 hda-4-201

Description

Histone deacetylase 4 [Source:NCBI gene (formerly Entrezgene);Acc:181723]

Location

About this transcript

This transcript has 11 exons, is annotated with 13 domains and features and maps to 66 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
C10E2.3a.1	hda-4-201	3622	869aa	C10E2.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O17323	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C10E2.3b.1	hda-4-202	2451	816aa	C10E2.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,622 bps, Translation length: 869 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O17323

Version

C10E2.3a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase