Transcript: F55B12.3a.1 sel-10-202

Description

F-box/WD repeat-containing protein sel-10 [Source:NCBI gene (formerly Entrezgene);Acc:179878]

Location

About this transcript

This transcript has 11 exons, is annotated with 47 domains and features and maps to 104 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F55B12.3a.1	sel-10-202	2370	587aa	F55B12.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q93794	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
F55B12.3b.1	sel-10-201	2361	585aa	F55B12.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
F55B12.3c	sel-10-203	1881	No protein	-	A non-coding gene.ncRNA	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,370 bps, Translation length: 587 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q93794

Version

F55B12.3a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase