Transcript: F57C7.3b.1

Description

Syndecan; putative syndecan [Source:NCBI gene;Acc:181259]

Location

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features and maps to 70 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F57C7.3a.1	-	1508	288aa	F57C7.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P50605	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
F57C7.3b.1	-	1490	287aa	F57C7.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4H9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,490 bps, Translation length: 287 residues

Version

F57C7.3b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase