Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: lst-4 WBGene00003086

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Description

PX domain-containing protein;Sorting nexin lst-4 [Source:NCBI gene (formerly Entrezgene);Acc:178361]

Location

Chromosome IV: 14,061,000-14,069,860 reverse strand.

WBcel235:BX284604.4

About this gene

This gene has 8 transcripts (splice variants), 85 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y37A1B.2b.1	lst-4-202	2143	592aa	Y37A1B.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Y37A1B.2c.1	lst-4-201	2074	566aa	Y37A1B.2c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4E2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Y37A1B.2d.1	lst-4-203	2064	564aa	Y37A1B.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y37A1B.2f.1	lst-4-204	1878	505aa	Y37A1B.2f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
Y37A1B.2g.1	lst-4-206	1065	354aa	Y37A1B.2g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	N1NVC3	-
Y37A1B.2h.1	lst-4-207	1059	352aa	Y37A1B.2h.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061AD14	-
Y37A1B.2a.1	lst-4-208	499	164aa	Y37A1B.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
Y37A1B.2e.1	lst-4-205	174	57aa	Y37A1B.2e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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