Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: itsn-1 WBGene00006405

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Description

Intersectin-1;SH3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:178491]

Location

Chromosome IV: 17,119,682-17,126,269 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 6 transcripts (splice variants), 1438 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y116A8C.36d.1	itsn-1-201	3600	1087aa	Y116A8C.36d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AS36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Y116A8C.36a.1	itsn-1-202	3589	1085aa	Y116A8C.36a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U2T9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y116A8C.36e.1	itsn-1-204	2484	827aa	Y116A8C.36e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AUH0	-
Y116A8C.36b.1	itsn-1-203	2478	825aa	Y116A8C.36b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6N0W0	-
Y116A8C.36f.1	itsn-1-206	1905	634aa	Y116A8C.36f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3ARL5	-
Y116A8C.36c.1	itsn-1-205	1899	632aa	Y116A8C.36c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6N0W1	-

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Summary

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