Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Gene: Y71F9AL.10 WBGene00022115

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Description

RING-type E3 ubiquitin transferase [Source:NCBI gene (formerly Entrezgene);Acc:171852]

Location

Chromosome I: 2,866,506-2,870,172 forward strand.

WBcel235:BX284601.5

About this gene

This gene has 5 transcripts (splice variants), 271 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y71F9AL.10a.1	Y71F9AL.10-204	1514	189aa	Y71F9AL.10a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N4I6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Y71F9AL.10c.1	Y71F9AL.10-202	1516	187aa	Y71F9AL.10c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IMP7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y71F9AL.10b.1	Y71F9AL.10-201	1459	168aa	Y71F9AL.10b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IMW1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y71F9AL.10d.1	Y71F9AL.10-203	1453	166aa	Y71F9AL.10d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V6Z7Z0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y71F9AL.10e.1	Y71F9AL.10-205	459	152aa	Y71F9AL.10e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IJT2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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