Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: smp-1 WBGene00004889

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Description

SeMaPhorin related; Sema domain-containing protein; Semaphorin-1A [Source:NCBI gene;Acc:173351]

Location

Chromosome I: 14,807,462-14,815,753 forward strand.

WBcel235:BX284601.5

About this gene

This gene has 6 transcripts (splice variants) and 5 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
Y54E5B.1b.2	-	2583	264aa	Y54E5B.1b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q16	-
Y54E5B.1b.4	-	2581	264aa	Y54E5B.1b.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q16	-
Y54E5B.1c.1	-	2562	714aa	Y54E5B.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A7R9SVH9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Y54E5B.1b.1	-	2559	264aa	Y54E5B.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q16	-
Y54E5B.1a.1	-	2546	712aa	Y54E5B.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q17330	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Y54E5B.1b.3	-	1631	264aa	Y54E5B.1b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q16	-

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Summary

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