Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: psr-1 WBGene00004205

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Description

Bifunctional arginine demethylase and lysyl-hydroxylase psr-1;JmjC domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:177229]

Location

Chromosome IV: 4,653,262-4,655,850 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 4 transcripts (splice variants), 211 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F29B9.4c.1	psr-1-202	1251	416aa	F29B9.4c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBL8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
F29B9.4a.2	psr-1-201	1418	400aa	F29B9.4a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GYI4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
F29B9.4a.1	psr-1-203	1346	400aa	F29B9.4a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GYI4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
F29B9.4b.1	psr-1-204	855	284aa	F29B9.4b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q27GT3	-

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Summary

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