Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
- Variant table
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- Structural variants
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ID History
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Gene: F42H10.3 WBGene00018367

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Description

LIM and SH3 domain protein F42H10.3 [Source:NCBI gene (formerly Entrezgene);Acc:185685]

Location

Chromosome III: 8,484,153-8,488,396 forward strand.

WBcel235:BX284603.4

About this gene

This gene has 2 transcripts (splice variants), 386 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F42H10.3a.1	F42H10.3-201	1256	335aa	F42H10.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34416	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
F42H10.3b.1	F42H10.3-202	1239	319aa	F42H10.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L8E951	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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