Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Ontologies
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Genetic Variation
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Gene: F07A11.4 WBGene00008547

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Description

Ubiquitin carboxyl-terminal hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:174780]

Location

Chromosome II: 11,601,011-11,611,552 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 3 transcripts (splice variants), 2 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F07A11.4a.2	F07A11.4-201	3764	1135aa	F07A11.4a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19132	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
F07A11.4a.1	F07A11.4-202	3652	1135aa	F07A11.4a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q19132	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
F07A11.4b.1	F07A11.4-203	2847	948aa	F07A11.4b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HA92	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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