Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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External references
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ID History
- Gene history

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Gene: C07A12.7 WBGene00015561

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Description

GAT domain-containing protein;TOM1-like protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:180723]

Location

Chromosome X: 4,517,739-4,522,144 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 817 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
C07A12.7a.2	C07A12.7-201	1600	437aa	C07A12.7a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95QX5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C07A12.7c.1	C07A12.7-202	2139	140aa	C07A12.7c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86GT7	-
C07A12.7c.2	C07A12.7-203	1475	140aa	C07A12.7c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86GT7	-
C07A12.7a.1	C07A12.7-204	1467	437aa	C07A12.7a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95QX5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C07A12.7b.1	C07A12.7-205	1366	403aa	C07A12.7b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KYH5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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