Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Ontologies
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Genetic Variation
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Gene: plrg-1 WBGene00006481

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Description

WD_REPEATS_REGION domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:179500]

Location

Chromosome V: 10,806,141-10,807,912 reverse strand.

WBcel235:BX284605.5

About this gene

This gene has 3 transcripts (splice variants) and 217 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
D1054.15a.1	plrg-1-202	1558	494aa	D1054.15a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EEL2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
D1054.15a.2	plrg-1-201	1545	494aa	D1054.15a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EEL2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
D1054.15b.1	plrg-1-203	1317	438aa	D1054.15b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECP2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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