Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
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Gene: taf-3 WBGene00006384

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Description

PHD-type domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:181704]

Location

Chromosome X: 16,332,435-16,346,028 forward strand.

WBcel235:BX284606.5

About this gene

This gene has 4 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
C11G6.1a.1	taf-3-202	3474	1007aa	C11G6.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9P861	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
C11G6.1d.1	taf-3-201	3285	942aa	C11G6.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I6CMF0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
C11G6.1b.1	taf-3-203	1047	348aa	C11G6.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9P862	-
C11G6.1c.1	taf-3-204	630	209aa	C11G6.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9P863	-

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Summary

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