Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: USP53 ENSBTAG00000010350

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Description

ubiquitin specific peptidase 53 [Source:VGNC Symbol;Acc:VGNC:58425]

Location

Primary_assembly 6: 6,012,872-6,054,341 reverse strand.

ARS-UCD2.0:CM008173.2

About this gene

This gene has 6 transcripts (splice variants), 277 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000103726.1	USP53-201	5654	1168aa	ENSBTAP00000092314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T6U9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000109321.1	USP53-202	5486	1112aa	ENSBTAP00000101841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TWK7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000132484.1	USP53-203	5372	1074aa	ENSBTAP00000084857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLS1	-
ENSBTAT00000120272.1	USP53-204	5336	1062aa	ENSBTAP00000103941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U2R6	-
ENSBTAT00000131167.1	USP53-205	5258	1036aa	ENSBTAP00000095722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCD9	-
ENSBTAT00000049054.5	USP53-206	2602	801aa	ENSBTAP00000045997.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N2K3	-

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Summary

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