Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ITSN1 ENSBTAG00000021997

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Description

intersectin 1 [Source:VGNC Symbol;Acc:VGNC:30352]

Location

Primary_assembly 1: 1,665,339-1,908,831 reverse strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 6 transcripts (splice variants), 228 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081085.3	ITSN1-201	5491	1721aa	ENSBTAP00000057382.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQU1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000029333.8	ITSN1-202	5476	1716aa	ENSBTAP00000029333.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BKY4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000103977.1	ITSN1-203	4989	1220aa	ENSBTAP00000103620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TYA8	-
ENSBTAT00000065213.3	ITSN1-204	4785	1149aa	ENSBTAP00000055481.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N0W1	-
ENSBTAT00000100507.1	ITSN1-206	3407	1015aa	ENSBTAP00000086978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SS92	-
ENSBTAT00000116431.1	ITSN1-205	2987	878aa	ENSBTAP00000084574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SNW9	-

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Summary

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