Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HERPUD1 ENSBTAG00000076584

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Description

homocysteine inducible ER protein with ubiquitin like domain 1 [Source:UniProtKB Gene Name;Acc:F1MMX9]

Location

Primary_assembly 18: 24,966,649-24,984,524 forward strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000140183.1	HERPUD1-202	8487	404aa	ENSBTAP00000104011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S7S8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000022472.8	HERPUD1-201	8726	372aa	ENSBTAP00000022472.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MMX9	-
ENSBTAT00000150582.1	HERPUD1-205	8466	357aa	ENSBTAP00000105661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000149742.1	HERPUD1-203	8367	364aa	ENSBTAP00000105232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SFH0	-
ENSBTAT00000137595.1	HERPUD1-204	7965	230aa	ENSBTAP00000104593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TG28	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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