Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP47 ENSBTAG00000010919

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Description

ubiquitin specific peptidase 47 [Source:VGNC Symbol;Acc:VGNC:36732]

Location

Primary_assembly 15: 40,740,642-40,846,207 reverse strand.

ARS-UCD2.0:CM008182.2

About this gene

This gene has 3 transcripts (splice variants), 206 orthologues and 45 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084656.1	USP47-203	5881	1375aa	ENSBTAP00000072720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NK97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000014505.7	USP47-202	5797	1355aa	ENSBTAP00000014505.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N1Z2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000099231.1	USP47-201	5428	1287aa	ENSBTAP00000091335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T6C8	-

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Summary

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