Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: JADE2 ENSBTAG00000021687

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Description

jade family PHD finger 2 [Source:VGNC Symbol;Acc:VGNC:30359]

Location

Primary_assembly 7: 46,068,718-46,118,397 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 4 transcripts (splice variants), 210 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000099267.2	JADE2-202	6448	861aa	ENSBTAP00000083425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLA8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000129441.1	JADE2-204	3490	784aa	ENSBTAP00000086849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SND0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000086455.3	JADE2-201	2860	825aa	ENSBTAP00000073944.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MI33	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000084531.2	JADE2-203	1691	507aa	ENSBTAP00000066394.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N724	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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