Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PRKN ENSBTAG00000018996

.

Description

parkin RBR E3 ubiquitin protein ligase [Source:VGNC Symbol;Acc:VGNC:33342]

Location

Primary_assembly 9: 96,952,217-98,192,630 reverse strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 9 transcripts (splice variants), 221 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000065043.3	PRKN-207	1560	519aa	ENSBTAP00000054449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MY23	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000063967.3	PRKN-203	2523	460aa	ENSBTAP00000056268.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N2Z7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000091511.1	PRKN-204	2439	432aa	ENSBTAP00000102917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U024	-
ENSBTAT00000064521.4	PRKN-202	2434	460aa	ENSBTAP00000054593.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MYG1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000103253.1	PRKN-205	2091	316aa	ENSBTAP00000099671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQT1	-
ENSBTAT00000112248.2	PRKN-206	2028	431aa	ENSBTAP00000095968.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TGG9	-
ENSBTAT00000062978.4	PRKN-201	1441	425aa	ENSBTAP00000055410.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N0P4	-
ENSBTAT00000064741.3	PRKN-209	1069	287aa	ENSBTAP00000055427.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N0R1	-
ENSBTAT00000025286.8	PRKN-208	1014	338aa	ENSBTAP00000025286.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MIV9	-

.

Summary

.

.