Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SQSTM1 ENSBTAG00000015591

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Description

sequestosome 1 [Source:VGNC Symbol;Acc:VGNC:35265]

Location

Primary_assembly 7: 1,435,182-1,446,957 reverse strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 3 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000075019.2	SQSTM1-202	2029	442aa	ENSBTAP00000059264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LVE4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000131241.1	SQSTM1-201	2244	402aa	ENSBTAP00000101661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TWU8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000020709.7	SQSTM1-203	1987	413aa	ENSBTAP00000020709.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MIE2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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