Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PTCD2 ENSBTAG00000014675

.

Description

pentatricopeptide repeat domain 2 [Source:VGNC Symbol;Acc:VGNC:33490]

Location

Primary_assembly 20: 9,254,758-9,286,706 reverse strand.

ARS-UCD2.0:CM008187.2

About this gene

This gene has 5 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000019535.5	PTCD2-205	2084	406aa	ENSBTAP00000019535.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6Z0C8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000121345.1	PTCD2-204	1883	353aa	ENSBTAP00000103456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TXS1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000093807.1	PTCD2-202	1861	346aa	ENSBTAP00000091714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T4S9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000090894.1	PTCD2-203	1648	280aa	ENSBTAP00000088018.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SV15	-
ENSBTAT00000118031.1	PTCD2-201	1435	216aa	ENSBTAP00000095849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCR3	-

.

Summary

.

.