Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP48 ENSBTAG00000006940

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Description

ubiquitin specific peptidase 48 [Source:VGNC Symbol;Acc:VGNC:36733]

Location

Primary_assembly 2: 131,013,149-131,086,069 forward strand.

ARS-UCD2.0:CM008169.2

About this gene

This gene has 5 transcripts (splice variants), 211 orthologues and 45 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000133357.2	USP48-201	3839	1036aa	ENSBTAP00000100966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUA9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000110291.2	USP48-202	3683	984aa	ENSBTAP00000097222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TF55	-
ENSBTAT00000009110.8	USP48-203	3656	975aa	ENSBTAP00000009110.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BF92	-
ENSBTAT00000084478.3	USP48-204	3578	949aa	ENSBTAP00000061492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0I2	-
ENSBTAT00000097305.2	USP48-205	3386	1001aa	ENSBTAP00000079946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SCH5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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