Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATG16L1 ENSBTAG00000003928

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Description

autophagy related 16 like 1 [Source:VGNC Symbol;Acc:VGNC:26253]

Location

Primary_assembly 3: 112,968,402-113,012,701 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000005131.8	ATG16L1-204	3468	623aa	ENSBTAP00000005131.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BGS8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000076323.2	ATG16L1-201	3457	607aa	ENSBTAP00000068004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M3D1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000075306.3	ATG16L1-202	3378	588aa	ENSBTAP00000061276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LZW5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000118238.2	ATG16L1-203	2946	444aa	ENSBTAP00000096612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9THP7	-

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Summary

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