Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCMH1 ENSBTAG00000001629

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Description

Scm polycomb group protein homolog 1 [Source:VGNC Symbol;Acc:VGNC:34340]

Location

Primary_assembly 3: 104,965,111-105,189,641 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 7 transcripts (splice variants), 221 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000002134.8	SCMH1-207	3291	663aa	ENSBTAP00000002134.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BBV6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000127130.2	SCMH1-201	3240	649aa	ENSBTAP00000091457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T6Q0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000066775.3	SCMH1-203	3106	653aa	ENSBTAP00000061499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MZA1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000097548.2	SCMH1-205	3029	592aa	ENSBTAP00000097072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TLA2	-
ENSBTAT00000084094.3	SCMH1-204	3022	652aa	ENSBTAP00000060630.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MXS7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000099945.2	SCMH1-202	2880	529aa	ENSBTAP00000079353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S7T0	-
ENSBTAT00000125668.2	SCMH1-206	2696	481aa	ENSBTAP00000083559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLM0	-

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Summary

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