Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: USP40 ENSBTAG00000000149

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Description

ubiquitin specific peptidase 40 [Source:VGNC Symbol;Acc:VGNC:52845]

Location

Primary_assembly 3: 113,167,926-113,257,496 reverse strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues and 45 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000073478.2	USP40-201	4513	1286aa	ENSBTAP00000057553.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LLS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000000172.7	USP40-203	4876	1233aa	ENSBTAP00000000172.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BKD2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000073057.3	USP40-202	4723	1262aa	ENSBTAP00000068489.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MCE2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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